Peering inside the black box: Explainable AI to interpret advanced computer vision fungal pathogen prediction. Joshua D. Guthrie, Shamanth A. Shankarnarayan, Daniel A. Charlebois. Scientific Reports, doi: 10.1038/s41598-026-48015-2 (2026).

Magnetic field platform for experiments on well-mixed and spatically structured microbial populations. Akila Bandara, Enoki Li, Daniel A. Charlebois. Biophysical Reports, 4: 100165 (2024).

Quantitative systems-based prediction of antimicrobial resistance. Daniel A. Charlebois. npj Systems Biology and Applications, 9: 40 (2023).

Role of network-mediated stochasticity in mammalian drug resistance. Kevin Farquhar, Daniel A. Charlebois, Mariola Szenk, Joseph Cohen, Dmitry Nevozhay, Gabor Balazsi. Nature Communications, 10: 2766 (2019).

Multiscale effects of heating and cooling on genes and gene networks. Daniel A. Charlebois, Kevin Hauser, Sylvia Marshall, Gabor Balazsi. Proceeding of the National Academy of Sciences of the United States of America, 115: E10797 (2018).

Gene express noise facilitates adaptation and drug resistance independently of mutation. Daniel A. Charlebois, Nezar Abdennur, Mads Kaern. Physical Review Letters, 107: 218101 (2011)